ProMate

Predicting the location of potential protein-protein binding sites
for unbound proteins





Upload your pdb file:

                    And/Or enter a 4 letters PDB-ID:      Search the PDB...

  Which chain to use?    

Please choose the scores configuration: use default let me choose

Single amino acids distribution: use don't use
Atoms distribution: use don't use
Chemical character: use don't use
Amino acid pairs distribution: use don't use
Evolutionary conserved positions: use don't use
Non-regular secondary structure length: use don't use
Sequence distances within a circle: use don't use
Secondary structure: use don't use
Domains: use don't use
Hydrophobic patch rank: use don't use
Hydrophobic patch size: use don't use
Temperature factor (B-factor): use don't use
Water molecules: use don't use

Initial probabilities file: use don't use

Please select the output files to be produced:
A text file with the surface dots probabilities
A pdb file with the AAs colored by their interface probability (full range of colors)
A pdb file with the surface atoms colored by their interface probability (full range of colors)
A pdb file with the predicted interface patch colored in red